Michael's Domain

The fact that everything looks different doesn't mean that all has changed

Molecular Weight and Extinction Coefficient of Oligonucleotides

The formula to calculate the molecular weight of DNA oligonucleotides is:

MW (g/mol)= (nA x 249.08619) + (nG x 265.0811) + (nC x 225.07496) + (nT x 240.07462)

To calculate ε (epsilon, the extinction coefficient) of an oligo, the formula is:

ε (in l/mmol) = amount of As x 15.4 + amount of Cs x 7.3 + amount of Gs x 11.4 + amount of Ts x 8.8

ε is needed to correctly calculate the concentration of an oligo based on the OD at 260nm. The formula is:

c (in mmol/l) = OD(260nm) / ε


© Michael Jeltsch 2006

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